Source code for bioat.lib.libsnakemake

import os



[docs]
def check_cmd(x):
    return any(
        os.access(os.path.join(path, x), os.X_OK)
        for path in os.environ["PATH"].split(os.pathsep)
    )




[docs]
def print_head(SAMPLES, MODE):
    print('----------\nSAMPLES:')
    [print('\t' + i) for i in SAMPLES]
    print('----------\nMODE:')
    print('\t' + MODE)
    print('----------\n\n')




[docs]
def check_read(x):
    if x == "PE":
        read = ['R1', 'R2']
    elif x == "SE":
        read = ['SE']
    else:
        raise ValueError()
    return read